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版本更新 · v2arXiv:2507.22953

CADS: A Comprehensive Anatomical Dataset and Segmentation for Whole-Body Anatomy in Computed Tomography

Murong Xu, Fernando Navarro, Maksym Fritsak, Ibrahim Ethem Hamamci, Suprosanna Shit, Bastian Wittmann, Sezgin Er, Sebastian M. Christ 等 33 位作者

原文摘要

Volumetric computed tomography (CT) segmentation supports quantitative image analysis, but most AI-based methods remain organ-specific, with fragmented models, inconsistent label definitions, and heterogeneous training and evaluation protocols. Here we present CADS, a unified data-model framework for scalable and generalizable whole-body CT segmentation. We construct a SNOMED-CT-referenced anatomical label space harmonizing heterogeneous cohorts from over 100 imaging centers, yielding complete annotations of 167 structures across 22,022 CT volumes and markedly expanding anatomical coverage and scale beyond existing resources. To complete labels on sparsely annotated CTs, we combine self-training with shape-informed quality control based on neural implicit functions, curating high-quality pseudo-labels. Trained on this resource, CADS shows robust whole-body segmentation across distribution shifts and improved performance relative to state-of-the-art approaches across 18 public datasets. We further validate it in an independent, expert-reviewed real-world oncology cohort of 2,864 CTs. The curated dataset, pretrained models, and user-friendly software together provide an accessible, reproducible foundation for large-scale anatomical segmentation and computational anatomy research.

eess.IV · cs.CV

版本更新 · v4arXiv:2603.23398

Graph Energy Matching: Transport-Aligned Energy-Based Modeling for Graph Generation

Michal Balcerak, Suprosanna Shit, Chinmay Prabhakar, Sebastian Kaltenbach, Michael S. Albergo, Yilun Du, Bjoern Menze

原文摘要

Generative modeling of discrete data, such as graphs, underpins many scientific and industrial applications, including molecular discovery and materials design. In these domains, probabilistic inference is particularly valuable, as it enables composable generation and principled incorporation of desired constraints, such as structural or functional properties. Energy-based models naturally support this goal by capturing relative likelihoods and enabling composable inference by directly enforcing constraints during inference. However, discrete energy-based models typically struggle with efficient and high-quality sampling, as off-support regions often contain spurious local minima, trapping samplers and causing training instabilities, resulting in a fidelity gap compared to discrete diffusion models. To address this gap, we introduce Graph Energy Matching (GEM), a discrete generative framework inspired by the Jordan-Kinderlehrer-Otto (JKO) transport-map optimization perspective. GEM learns a permutation-invariant potential energy that simultaneously guides discrete transport from noise toward high-likelihood graph regions and refines samples within these regions. We further introduce a sampling protocol leveraging an energy-based switching strategy, seamlessly bridging rapid, gradient-guided transport and a local mixing regime for effective exploration. On molecular graph benchmarks, GEM matches or surpasses strong discrete diffusion baselines on most reported metrics. Beyond improving generation quality, GEM's relative likelihood modeling enables targeted exploration, facilitating compositional generation, property-constrained sampling, and interpolation between graphs. Project page: https://michalbalcerak.ai/graph-energy-matching/.

cs.LG · cs.AI · stat.ML