Justice Ou University of Illinois at Urbana-Champaign, Tinglin Huang, Yilun Zhao Yale University, Ziyang Yu, Peiqing Lu Microsoft, Yifei Shen, Rex Ying Yale University
To improve the reliability of Large Language Models (LLMs) in clinical applications, retrieval-augmented generation (RAG) is extensively applied to provide factual medical knowledge. However, beyond general medical knowledge from open-ended datasets, clinical case-based knowledge is also critical for effective medical reasoning, as it provides context grounded in real-world patient experiences. Motivated by this, we propose Experience Retrieval-Augmentation ExpRAG framework based on Electronic Health Record(EHR), aiming to offer the relevant context from other patients’ discharge reports. ExpRAG performs retrieval through a coarse-to-fine process, utilizing an EHR-based report ranker to efficiently identify similar patients, followed by an experience retriever to extract task-relevant content for enhanced medical reasoning. To evaluate ExpRAG, we introduce DischargeQA, a clinical QA dataset with 1,280 discharge-related questions across diagnosis, medication, and instruction tasks. Each problem is generated using EHR data to ensure realistic and challenging scenarios. Experimental results demonstrate that ExpRAG consistently outperforms a text-based ranker, achieving an average relative improvement of 5.2%, highlighting the importance of case-based knowledge for medical reasoning.
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cs.CL
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Sihong Wu, Owen Jiang University of Pennsylvania, University of Pennsylvania, Yilun Zhao Yale University, Tiansheng Hu, Yiling Ma King Abdullah University of Science and Technology, Kaiyan Zhang Yale University, Manasi Patwardhan Tata Consultancy Services Limited, India, Arman Cohan Yale University and Allen Institute for Artificial Intelligence
Peer review is a multi-stage process involving reviews, rebuttals, meta-reviews, final decisions, and subsequent manuscript revisions. Recent advances in large language models (LLMs) have motivated methods that assist or automate different stages of this pipeline. In this survey, we synthesize techniques for (i) peer review generation, including fine-tuning strategies, agent-based systems, RL-based methods, and emerging paradigms to enhance generation; (ii) after-review tasks including rebuttals, meta-review and revision aligned to reviews; and (iii) evaluation methods spanning human-centered, reference-based, LLM-based and aspect-oriented. We catalog datasets, compare modeling choices, and discuss limitations, ethical concerns, and future directions. The survey aims to provide practical guidance for building, evaluating, and integrating LLM systems across the full peer review workflow.
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cs.CL
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Xue Xia, Zheyuan Yang, Arman Cohan Yale University and Allen Institute for Artificial Intelligence, Yilun Zhao Yale University
We introduce MMSciCode, a comprehensive expert-level, multilingual multi-discipline benchmark for evaluating foundation models in scientific code generation. It includes 624 expert-annotated research coding problems spanning six core scientific disciplines. Compared to prior benchmarks, MMSciCode features three key advancements. First, it challenges models to integrate domain-specific knowledge with algorithmic reasoning to implement core functions from research papers, moving beyond the isolated, general-purpose coding tasks typically assessed in current benchmarks. Second, each problem is meticulously annotated by domain experts through a rigorous paper-grounded process, with strict quality controls implemented to ensure dataset integrity and authenticity. Finally, each problem is equipped with comprehensive unit test suites and containerized environments, enabling reproducible and diagnostic evaluation of both functional correctness and domain validity. We conduct an extensive evaluation of 28 state-of-the-art foundation models and 2 agentic coding tools on MMSciCode. Our results reveal that even the best non-agentic model achieves only around 15% accuracy, while the top agentic coding tool reaches 32.2%, both still far below human expert performance of 68.8%. Through comprehensive error analyses and case studies, we identify substantial performance gaps between models and human experts, providing actionable insights for advancing expert-level scientific code generation.
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cs.CL · cs.AI
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Chengye Wang, Lin Fu, Zexi Kuang, Yilun Zhao Yale University
Existing document OCR largely targets plain text or Markdown, discarding the structural and executable properties that make LaTeX essential for scientific publishing. We study page-level reconstruction of scientific PDFs into compilable LaTeX and introduce TexOCR-Bench, a benchmark, and TexOCR-Train, a large-scale training corpus, for this task. TexOCR-Bench features a multi-dimensional evaluation suite that jointly assesses transcription fidelity, structural faithfulness, and end-to-end compilability. Leveraging TexOCR-Train, we train a 2B-parameter model, TexOCR, using supervised fine-tuning (SFT) and reinforcement learning (RL) with verifiable rewards derived from LaTeX unit tests that directly enforce compilability and referential integrity. Experiments across 21 frontier models on TexOCR-Bench show that existing systems frequently violate key document invariants, including consistent section structure, correct float placement, and valid label–reference links, which undermines compilation reliability and downstream usability. Our analysis further reveals that RL with verifiable rewards yields consistent improvements over SFT alone, particularly on structural and compilation metrics.
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cs.CL
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Yilun Zhao Yale University, Jinbiao Wei, Tingyu Song University of the Chinese Academy of Sciences, Siyue Zhang, Chen Zhao NYU Shanghai, Arman Cohan Yale University and Allen Institute for Artificial Intelligence
Reasoning-intensive retrieval aims to surface evidence that maximizes downstream reasoning utility rather than only topical similarity. This capability is increasingly vital for agentic retriever-in-the-loop systems such as Deep-Research. However, existing retriever evaluation benchmarks, exemplified by Bright, provide narrow gold sets and evaluate retrievers in isolation, which obscures their value inside realistic agent workflows. We introduce Bright-Pro, an evaluation framework that assesses the effectiveness of retrievers in agentic search systems. Bright-Pro covers a broad range of queries across diverse professional domains. For each query, we provide expert-annotated reasoning aspects, positive documents, a reference response, and evaluation rubrics, enabling fine-grained assessment of retriever performance. Beyond static evaluation, we further assess retrievers in the context of agentic search systems, measuring their practical utility when serving as core components within agentic workflows. Using Bright-Pro, we evaluate classical lexical, general-purpose, and reasoning-intensive retrievers, providing actionable insights for future retriever development.
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cs.CL · cs.AI
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Yiyang Wei Yale University, Tingyu Song University of the Chinese Academy of Sciences, Siyue Zhang, Yilun Zhao Yale University
Reasoning-Intensive Retrieval (RIR) targets retrieval settings where relevance is mediated by latent inferential links between a query and supporting evidence, rather than semantic similarity. Motivated by the emergent reasoning abilities of Large Language Models (LLMs), recent work integrates these capabilities into the IR field, spanning the entire pipeline from benchmarks to retrievers and rerankers. Despite this progress, the field lacks a systematic framework to organize current efforts and articulate a clear path forward. To provide a clear roadmap for this rapidly growing yet fragmented area, this survey (1) systematizes existing RIR benchmarks by knowledge domains and modalities, providing a detailed analysis of the current landscape; (2) introduces a structured taxonomy that categorizes methods based on where and how reasoning is integrated into the retrieval pipeline, alongside an analysis of their trade-offs and practical applications; and (3) summarizes challenges and future directions to guide research in this evolving field.
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cs.CL
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Tianyu Yang, Sihong Wu, Yilun Zhao Yale University, Zhenwen Liang Tencent AI Lab, Lisen Dai Columbia University, Chen Zhao NYU Shanghai, Minhao Cheng Pennsylvania State University, Arman Cohan Yale University and Allen Institute for Artificial Intelligence 等 9 位作者
Multimodal Mathematical Reasoning (MMR) has recently attracted increasing attention for its capability to solve mathematical problems involving both textual and visual modalities. However, current models still face significant challenges in real-world visual math tasks, often misinterpreting diagrams, failing to align mathematical symbols with visual evidence, or producing inconsistent reasoning steps. Moreover, existing evaluations mainly focus on checking final answers rather than verifying the correctness or executability of each intermediate step. A growing body of recent research addresses these issues by integrating structured perception, explicit alignment, and verifiable reasoning within unified frameworks.To establish a clear roadmap for understanding and comparing different MMR approaches, we systematically review them around four fundamental questions: (1) What to extract from multimodal inputs, (2) How to represent and align textual and visual information, (3) How to perform the reasoning, and (4) How to evaluate the correctness of the overall reasoning process. Finally, we discuss open challenges and share our thoughts on future research directions.
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cs.CL · cs.CV
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Ziyu Chen University of Chicago, Yilun Zhao Yale University, Chengye Wang, Rilyn R. Han, Manasi Patwardhan Tata Consultancy Services Limited, India, Arman Cohan Yale University and Allen Institute for Artificial Intelligence
Constructing scientific multimodal document reasoning datasets for foundation model training involves an inherent trade-off among scale, faithfulness, and realism. To address this challenge, we introduce the synthesize-and-reground framework, a two-stage pipeline comprising: (1) Claim-Centric QA Synthesis, which generates faithful, isolated QA pairs and reasoning on focused segments, and (2) Document-Scale Regrounding, which programmatically re-embeds these pairs into full-document tasks to ensure realistic complexity. We present SciMDR, a large-scale training dataset for cross-modal comprehension, comprising 300K QA pairs with explicit reasoning chains across 20K scientific papers. We further construct SciMDR-Eval, an expert-annotated benchmark to evaluate multimodal comprehension within full-length scientific workflows. Experiments demonstrate that models fine-tuned on SciMDR achieve significant improvements across multiple scientific QA benchmarks, particularly in tasks requiring complex document-level reasoning.
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cs.CL · cs.CV
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Tingyu Song University of the Chinese Academy of Sciences, Yanzhao Zhang Alibaba Group, Mingxin Li Alibaba Group, Zhuoning Guo Hong Kong University of Science and Technology (Guangzhou), Dingkun Long, Pengjun Xie Alibaba Group, Siyue Zhang, Yilun Zhao Yale University 等 9 位作者
Composed Image Retrieval (CIR) is a pivotal and complex task in multimodal understanding. Current CIR benchmarks typically feature limited query categories and fail to capture the diverse requirements of real-world scenarios. To bridge this evaluation gap, we leverage image editing to achieve precise control over modification types and content, enabling a pipeline for synthesizing queries across a broad spectrum of categories. Using this pipeline, we construct EDIR, a novel fine-grained CIR benchmark. EDIR encompasses 5,000 high-quality queries structured across five main categories and fifteen subcategories. Our comprehensive evaluation of 13 multimodal embedding models reveals a significant capability gap; even state-of-the-art models (e.g., RzenEmbed and GME) struggle to perform consistently across all subcategories, highlighting the rigorous nature of our benchmark. Through comparative analysis, we further uncover inherent limitations in existing benchmarks, such as modality biases and insufficient categorical coverage. Furthermore, an in-domain training experiment demonstrates the feasibility of our benchmark. This experiment clarifies the task challenges by distinguishing between categories that are solvable with targeted data and those that expose intrinsic limitations of current model architectures.
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cs.CL · cs.CV
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Xueqing Peng Yale University, Lingfei Qian Yale University, Yan Wang Yale University, Ruoyu Xiang, Yueru He Columbia University, Yang Ren Yale University, Mingyang Jiang, Vincent Jim Zhang 等 47 位作者
Real-world financial analysis involves information across multiple languages and modalities, from reports and news to scanned filings and meeting recordings. Yet most existing evaluations of LLMs in finance remain text-only, monolingual, and largely saturated by current models. To bridge these gaps, we present MultiFinBen, the first expert-annotated multilingual (five languages) and multimodal (text, vision, audio) benchmark for evaluating LLMs in realistic financial contexts. MultiFinBen introduces two new task families: multilingual financial reasoning, which tests cross-lingual evidence integration from filings and news, and financial OCR, which extracts structured text from scanned documents containing tables and charts. Rather than aggregating all available datasets, we apply a structured, difficulty-aware selection based on advanced model performance, ensuring balanced challenge and removing redundant tasks. Evaluating 21 leading LLMs shows that even frontier multimodal models like GPT-4o achieve only 46.01% overall, stronger on vision and audio but dropping sharply in multilingual settings. These findings expose persistent limitations in multilingual, multimodal, and expert-level financial reasoning. All datasets, evaluation scripts, and leaderboards are publicly released.
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cs.CL · cs.CV
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表
Jinbiao Wei, Yilun Zhao Yale University, Kangqi Ni, Arman Cohan Yale University and Allen Institute for Artificial Intelligence
End-to-end GUI agents for real desktop environments require large amounts of high-quality interaction data, yet collecting human demonstrations is expensive and existing synthetic pipelines often suffer from limited task diversity or noisy, goal-drifting trajectories. We present a trajectory expansion framework Anchor that bootstraps scalable desktop supervision from a small set of verified seed demonstrations. Starting from each seed, we identify branch points that correspond to meaningful state changes and propose new, state-grounded task variants conditioned on the current GUI context. An executing agent then follows the proposed instructions to generate new trajectories, while a verifier enforces task completion via state-aware checks and trajectory-level consistency. To improve supervision quality, we further apply task-conditioned step-level filtering to remove ungrounded actions and denoise post-branch segments to maintain coherent intent. Experiments on standard desktop benchmarks, OSWorld and WindowsAgentArena, show that models fine-tuned on our expanded corpus achieve consistent improvements over zero-shot agents and representative synthesis baselines, and generalize across applications and operating systems.
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cs.CL
Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers) · 2026 · 正式发表